EXTRA-14299 - USA (Bismarck, North Dakota) - Whole Genome Sequencing and Bioinformatics Development and Consultation service - Deadline September 17,2021

Product (RFP/RFQ/RFI/Solicitation/Tender/Bid Etc.) ID: EXTRA-14299

Government Authority located in Bismarck, North Dakota; USA based organization looking for expert vendor for whole genome sequencing and bioinformatics development and consultation service.

[A] Budget: Looking for proposal

[B] Scope of Service:

(1) Vendor needs to provide whole genome sequencing and bioinformatics development and consultation service to the government authority located in Bismarck, ND.
- Host the google cloud platform (GCP) for public health bioinformatics.
- Onboard laboratory scientists into the bioinformatics platform.
- Build reproducible, standardized, and portable workflows in the WDL programming language to run specifically on the platform.
- Distribute the workflows through the platform for public use
- Train public health scientists and epidemiologists to use these tools
- Perform the genomic analysis in when necessary
- Maintain, revise, troubleshoot, customize, and improve workflows as best practices evolve
- Provide dashboards using google data studio (GDS) for visual consumption of bioinformatic results generate.
- Host weekly calls for training and updates
- Support multiple sequencing platforms including technologies.
- Provide general consulting on public health bioinformatics for infectious disease surveillance based on years of state and federal public health laboratory experience
- General antimicrobial resistance characterization
- AMR for tuberculosis
- Enteric characterization and outbreak analysis
- Healthcare acquired infection cluster analysis
- provide all the services that are necessary for the to complete the analysis, perform the necessary tools to call the organism, provide education on computing and troubleshooting, host the Google Cloud Platform, provide user management, access permissions, training, cloud computing, SARS-CoV2 workflows, installation and training of the workflows for specimen characterization to include QC lineage determination, cluster analysis, phylogenetic analysis and genetic distances for visualization of clusters, workflows for the data submission to public repositories including GISAID, NCBI GenBank and NCBI SRA and the development of a SARS-COV-2 dashboard customized to the specific traits of concern all functions that are necessary but the department does not currently have the ability to perform.
- Vendors must respond to the Procurement Officer in writing and include a description of the commodity or service being offered as an alternative. Include pricing, including any applicable shipping and handling.

[C] Eligibility:

Onshore (USA organization Only)

[D] Work Performance:

Performance of the work will be offsite.

Expiry Date : Friday, 17 September, 2021

Category : Professional, Consulting, Administrative or Management Support Services, Software, System and Application

Country : USA

State : North Dakota

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